High genotypic diversity found among population of Phytophthora infestans collected in Estonia.
Identifieur interne : 000C15 ( Main/Exploration ); précédent : 000C14; suivant : 000C16High genotypic diversity found among population of Phytophthora infestans collected in Estonia.
Auteurs : Eve Runno-Paurson [Estonie] ; Riinu Kiiker [Estonie] ; Tiina Joutsjoki [Finlande] ; Asko Hannukkala [Finlande]Source :
- Fungal biology [ 1878-6146 ] ; 2016.
Descripteurs français
- KwdFr :
- Estonie (MeSH), Génotype (MeSH), Maladies des plantes (microbiologie), Phytophthora infestans (classification), Phytophthora infestans (génétique), Phytophthora infestans (isolement et purification), Solanum tuberosum (microbiologie), Séquences répétées d'acides nucléiques (MeSH), Techniques de génotypage (MeSH), Variation génétique (MeSH).
- MESH :
- génétique : Phytophthora infestans.
- isolement et purification : Phytophthora infestans.
- microbiologie : Maladies des plantes, Solanum tuberosum.
- classification : Estonie, Génotype, Phytophthora infestans, Séquences répétées d'acides nucléiques, Techniques de génotypage, Variation génétique.
English descriptors
- KwdEn :
- Estonia (MeSH), Genetic Variation (MeSH), Genotype (MeSH), Genotyping Techniques (MeSH), Phytophthora infestans (classification), Phytophthora infestans (genetics), Phytophthora infestans (isolation & purification), Plant Diseases (microbiology), Repetitive Sequences, Nucleic Acid (MeSH), Solanum tuberosum (microbiology).
- MESH :
- classification : Phytophthora infestans.
- genetics : Phytophthora infestans.
- isolation & purification : Phytophthora infestans.
- microbiology : Plant Diseases, Solanum tuberosum.
- Estonia, Genetic Variation, Genotype, Genotyping Techniques, Repetitive Sequences, Nucleic Acid.
Abstract
Potato late blight, caused by the oomycete pathogen Phytophthora infestans, is one of the most important diseases of potato worldwide. This is the first study characterising Estonian P. infestans population using the SSR marker genotyping method. 70 P. infestans isolates collected during the growing season in 2004 from eight potato fields in three different regions of Estonia were characterised with nine polymorphic SSR markers. A1 and A2 mating type isolates were detected from every studied field indicating the high potential for sexual reproduction, which raises the genotypic diversity in P. infestans population. Results revealed highly diverse P. infestans population in Estonia resembling the Northern European populations. Most of the multilocus genotypes were detected only once among the collected isolates. Subpopulations collected from different geographical regions of Estonia showed no differentiation from each other but instead formed one highly diverse group.
DOI: 10.1016/j.funbio.2015.11.008
PubMed: 26895867
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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This is the first study characterising Estonian P. infestans population using the SSR marker genotyping method. 70 P. infestans isolates collected during the growing season in 2004 from eight potato fields in three different regions of Estonia were characterised with nine polymorphic SSR markers. A1 and A2 mating type isolates were detected from every studied field indicating the high potential for sexual reproduction, which raises the genotypic diversity in P. infestans population. Results revealed highly diverse P. infestans population in Estonia resembling the Northern European populations. Most of the multilocus genotypes were detected only once among the collected isolates. Subpopulations collected from different geographical regions of Estonia showed no differentiation from each other but instead formed one highly diverse group. </div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">26895867</PMID><DateCompleted><Year>2016</Year><Month>11</Month><Day>02</Day></DateCompleted><DateRevised><Year>2016</Year><Month>12</Month><Day>30</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">1878-6146</ISSN><JournalIssue CitedMedium="Internet"><Volume>120</Volume><Issue>3</Issue><PubDate><Year>2016</Year><Month>Mar</Month></PubDate></JournalIssue><Title>Fungal biology</Title><ISOAbbreviation>Fungal Biol</ISOAbbreviation></Journal><ArticleTitle>High genotypic diversity found among population of Phytophthora infestans collected in Estonia.</ArticleTitle><Pagination><MedlinePgn>385-92</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.funbio.2015.11.008</ELocationID><ELocationID EIdType="pii" ValidYN="Y">S1878-6146(15)00226-3</ELocationID><Abstract><AbstractText>Potato late blight, caused by the oomycete pathogen Phytophthora infestans, is one of the most important diseases of potato worldwide. This is the first study characterising Estonian P. infestans population using the SSR marker genotyping method. 70 P. infestans isolates collected during the growing season in 2004 from eight potato fields in three different regions of Estonia were characterised with nine polymorphic SSR markers. A1 and A2 mating type isolates were detected from every studied field indicating the high potential for sexual reproduction, which raises the genotypic diversity in P. infestans population. Results revealed highly diverse P. infestans population in Estonia resembling the Northern European populations. Most of the multilocus genotypes were detected only once among the collected isolates. Subpopulations collected from different geographical regions of Estonia showed no differentiation from each other but instead formed one highly diverse group. </AbstractText><CopyrightInformation>Copyright © 2015 The British Mycological Society. Published by Elsevier Ltd. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Runno-Paurson</LastName><ForeName>Eve</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Kreutzwaldi 1, 51014, Tartu, Estonia. Electronic address: eve.runno-paurson@emu.ee.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kiiker</LastName><ForeName>Riinu</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Department of Plant Pathology, Institute of Agricultural and Environmental Sciences, Estonian University of Life Sciences, Kreutzwaldi 1, 51014, Tartu, Estonia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Joutsjoki</LastName><ForeName>Tiina</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Luke Natural Resources Institute Finland, Natural Resources and Bioproduction, Planta, FI-31600 Jokioinen, Finland.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hannukkala</LastName><ForeName>Asko</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Luke Natural Resources Institute Finland, Natural Resources and Bioproduction, Planta, FI-31600 Jokioinen, Finland.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>12</Month><Day>02</Day></ArticleDate></Article><MedlineJournalInfo><Country>Netherlands</Country><MedlineTA>Fungal Biol</MedlineTA><NlmUniqueID>101524465</NlmUniqueID></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D004957" MajorTopicYN="N">Estonia</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014644" MajorTopicYN="Y">Genetic Variation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005838" MajorTopicYN="N">Genotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D060005" MajorTopicYN="N">Genotyping Techniques</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D055750" MajorTopicYN="N">Phytophthora infestans</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012091" MajorTopicYN="N">Repetitive Sequences, Nucleic Acid</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D011198" MajorTopicYN="N">Solanum tuberosum</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Population variation</Keyword><Keyword MajorTopicYN="N">Potato late blight</Keyword><Keyword MajorTopicYN="N">Simple-sequence repeat (SSR)</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2015</Year><Month>06</Month><Day>08</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2015</Year><Month>10</Month><Day>31</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2015</Year><Month>11</Month><Day>18</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2016</Year><Month>2</Month><Day>21</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2016</Year><Month>2</Month><Day>21</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2016</Year><Month>11</Month><Day>3</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">26895867</ArticleId><ArticleId IdType="pii">S1878-6146(15)00226-3</ArticleId><ArticleId IdType="doi">10.1016/j.funbio.2015.11.008</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Estonie</li><li>Finlande</li></country></list><tree><country name="Estonie"><noRegion><name sortKey="Runno Paurson, Eve" sort="Runno Paurson, Eve" uniqKey="Runno Paurson E" first="Eve" last="Runno-Paurson">Eve Runno-Paurson</name></noRegion><name sortKey="Kiiker, Riinu" sort="Kiiker, Riinu" uniqKey="Kiiker R" first="Riinu" last="Kiiker">Riinu Kiiker</name></country><country name="Finlande"><noRegion><name sortKey="Joutsjoki, Tiina" sort="Joutsjoki, Tiina" uniqKey="Joutsjoki T" first="Tiina" last="Joutsjoki">Tiina Joutsjoki</name></noRegion><name sortKey="Hannukkala, Asko" sort="Hannukkala, Asko" uniqKey="Hannukkala A" first="Asko" last="Hannukkala">Asko Hannukkala</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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